Welcome on ATOLL-web platform. ATOLL (Aligned Transmembrane dOmain Layout fLattening) is a program for visualizing 3D structures of the transmembrane helix bundle of membrane proteins. ATOLL projects portions of helices onto the plane of the membrane, as if looking at the protein from above the membrane. It allows the comparison of different conformations of the same protein or of different proteins. ATOLL principle and examples of applications are described in an application note submitted to Bioinformatics.
The software ATOLL is also available on GitHub github.com/LIT-CCM-lab/ATOLL.
This work was supported by Agence Nationale de Recherches sur le SIDA et les hépatites virales (ANRS) | Maladies infectieuses émergentes.